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Data-driven fine-grained region discovery in the mouse brain with transformers

Interdisciplinary Studies

Data-driven fine-grained region discovery in the mouse brain with transformers

A. J. Lee, A. Dubuc, et al.

Discover a scalable self-supervised workflow for detecting fine-grained tissue domains from multimillion-cell spatial transcriptomics data using CellTransformer, an encoder-decoder model that learns hierarchical tissue features and enables GPU-accelerated clustering on MERFISH and Slide-seqV2 whole-brain datasets. The research was conducted by Alex J. Lee, Alma Dubuc, Michael Kunst, Shenqin Yao, Nicholas Lusk, Lydia Ng, Hongkui Zeng, Bosiljka Tasic, and Reza Abbasi-Asl.... show more
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71
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