Food Science and Technology

ODFM, an omics data resource from microorganisms associated with fermented foods

T. W. Whon, S. W. Ahn, et al.

Dive into the world of ODFM, a cutting-edge data management system that integrates vital omics information of microorganisms linked to fermented foods. With extensive resources for genome sequences and taxonomic analyses, this database, crafted by authors Tae Woong Whon, Seung Woo Ahn, Sungjin Yang, Joon Yong Kim, Yeon Bee Kim, Yujin Kim, Ji-Man Hong, Hojin Jung, Yoon-E Choi, Se Hee Lee, and Seong Woon Roh, transforms the way we evaluate microbial isolates for fermentation starters.

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Abstract

ODFM is a data management system integrating comprehensive omics information for microorganisms associated with fermented foods. It archives genome, metagenome, metataxonome, and (meta)transcriptome sequences; currently holding 131 bacterial, 38 archaeal, and 28 eukaryotic genomes. ODFM offers BLAST search and ANI-based genetic relatedness measurement, enabling gene diversity and taxonomic analyses. Genome sequences and annotations are downloadable, and strains are available from a culture collection. ODFM is a comprehensive database covering entire microbiomes, providing information for evaluating microbial isolates as fermentation starters.

Publisher

Scientific Data

Published On

Apr 20, 2021

Authors

Tae Woong Whon, Seung Woo Ahn, Sungjin Yang, Joon Yong Kim, Yeon Bee Kim, Yujin Kim, Ji-Man Hong, Hojin Jung, Yoon-E Choi, Se Hee Lee, Seong Woon Roh

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