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Abstract
This paper introduces ENCORE, a practical approach to enhance the reproducibility and transparency of computational research. ENCORE addresses the reproducibility crisis by providing a standardized file system structure, pre-defined documentation templates, GitHub integration for version control, and an HTML-based navigator. The approach is agnostic to project type, data, programming language, and infrastructure. The authors share their experience using ENCORE, highlighting that the biggest challenge to widespread adoption is the lack of incentives for researchers to invest the necessary time and effort.
Publisher
Nature Communications
Published On
Sep 16, 2024
Authors
Antoine H. C. van Kampen, Utkarsh Mahamune, Aldo Jongejan, Barbera D. C. van Schaik, Daria Balashova, Danial Lashgari, Mia Pras-Raves, Eric J. M. Wever, Adrie D. Dane, Rodrigo García-Valiente, Perry D. Moerland
Tags
reproducibility
transparency
computational research
standardized structure
GitHub integration
documentation

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